rs234679988 SNP Detail

Summary

• ID
  rs234679988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123302949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTGAACCT CAGCTCGCTC
  ACCCACTATC TCATTTTACT TAAAATAATC ACTACTGAAT TGAAAGAACT AGTTCATCAT
  AAGGCTCAAG TAACCGCGGC GCGTTGCCCA AACATTTCAT TTACATTCTG GATGGTCTTC
  TGAGGGTGTC CTTAAGAATG GTCTGTATTA GTCCTGAGCT GAGAAGTCCG AGATTAAGGG
  Y
  CTTCCTTCTC TGGCCAGTAG ATGGTAGCCT GCATCTTTCC GTGGGTTTTT CTTTTGTGCC
  TGTCTGCACC TGTCAGGTTT TTTATTTTAC AAAATGTAGT TTTGTTTTTA TGTTACTCTG
  CTGTTACACA GGGCATAACA TTTTCATAAG GCTTTTTTGG GGACTACAGT CAATGATTAG
  CAAACAACTC TCTAAAGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320920412	CHEV_3_123212218	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234679988					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123302949 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	342 bp distal
Gm9369	predicted pseudogene 9369	642 bp downstream
Rr584525	regulatory region 584525	426 bp distal
Rr584526	regulatory region 584526	within coordinates
Rr584527	regulatory region 584527	10 bp proximal
Rr584528	regulatory region 584528	1596 bp proximal
Snhg8	small nucleolar RNA host gene 8	964 bp upstream
Snora24	small nucleolar RNA, H/ACA box 24	1234 bp upstream
Tssr31551	transcription start site region 31551	732 bp downstream
Tssr31552	transcription start site region 31552	685 bp downstream
Tssr35502	transcription start site region 35502	959 bp upstream
Tssr35503	transcription start site region 35503	371 bp upstream