rs234680440 SNP Detail

Summary

• ID
  rs234680440
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66211593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATATAGGG GAGGGGGGCA
  GTTTTCAAAA CCCTTAGTAG AAGCTGCAGT TGTGGCTAGC ACCAGGCCCT GCAGAGATTG
  TGCTTCTGTA ATTTATAAAT TACAGACAGT AAGGTATGAG CAGCCACAAT AAAATAGAGC
  AATTATAATG CTATACCAGT TATACCATAC AGAAGGCTAC GCAGATGTGA TTTCTCCCAC
  W
  CAAAATATCT CAATTCCTCA GCTTCCACAA TACTATTTTT AGACTGGTTG ACCATGGATA
  GCTAAGAACT GATAACAAGG GACTGCCCTG TTACCATTTG TTTAATTTGT CATCTACATT
  TGAACATCAA TGTTGACTCT GGTACACACA CACACACACA CACACACACA CACACACACA
  CACACACACA AACTTATCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367392	MGP_WTSI_14_66592981	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234680440					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367392	MGP_WTSI_14_66592981	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66211593 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Tssr126263	transcription start site region 126263	817 bp downstream
Tssr126264	transcription start site region 126264	776 bp downstream
Tssr126265	transcription start site region 126265	748 bp downstream
Tssr126266	transcription start site region 126266	709 bp downstream
Tssr126267	transcription start site region 126267	109 bp upstream
Tssr126268	transcription start site region 126268	693 bp upstream
Tssr126269	transcription start site region 126269	779 bp upstream
Tssr126270	transcription start site region 126270	1438 bp upstream
Tssr126271	transcription start site region 126271	1456 bp upstream
Tssr126272	transcription start site region 126272	1481 bp upstream
Tssr126273	transcription start site region 126273	1508 bp upstream
Tssr126274	transcription start site region 126274	1552 bp upstream
Tssr126275	transcription start site region 126275	1561 bp upstream
Tssr126276	transcription start site region 126276	1594 bp upstream
Tssr126277	transcription start site region 126277	1659 bp upstream
Tssr126278	transcription start site region 126278	1695 bp upstream
Tssr129260	transcription start site region 129260	785 bp upstream
Tssr129261	transcription start site region 129261	746 bp upstream
Tssr129262	transcription start site region 129262	733 bp upstream
Tssr129263	transcription start site region 129263	717 bp upstream
Tssr129264	transcription start site region 129264	664 bp upstream
Tssr129265	transcription start site region 129265	717 bp downstream
Tssr129266	transcription start site region 129266	752 bp downstream
Tssr129267	transcription start site region 129267	784 bp downstream
Tssr129268	transcription start site region 129268	846 bp downstream
Tssr129269	transcription start site region 129269	1554 bp downstream
Tssr129270	transcription start site region 129270	1575 bp downstream
Tssr129271	transcription start site region 129271	1619 bp downstream