rs234686231 SNP Detail

Summary

• ID
  rs234686231
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76300215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTAAGGA AGGACTTATC
  TGTAGAACAA TGTGGGGAAA CTGTAGCCAG ACAACGGTAA TGTTGGGAAG GAGCCAAAGA
  AACTTATTCT AAAAACTAAC ATTTTGTTTA CAGATTAGCA TTTATAGGGA AAAACTAAAT
  CCAATGTACC AGGCCCTAGG GCAGCTTGGG ACTTCCCTAT AGCTGAACAG CTTCTGCTGT
  R
  AACAGCTGTC TGAATCCAGA CATCTCAGGG ACAGCTTGTA AGGAGGCAGT TGTCTGAATC
  CAGCCATCTC AAGGACAACT TCTCCATCTT GTTGGCAGGG TCAAACAACC TAGGAGCGAA
  CACCTACCCC ACTTCTCCAA ATGTTTTCTT AACTGTCTGT TAACAGGTAA AGAATATAGA
  AATTGCTGTT TTTCTAAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386546258	MGP_WTSI_12_77354428	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234686231					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386546258	MGP_WTSI_12_77354428	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76300215 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	1446 bp proximal
Gm47525	predicted gene, 47525	734 bp downstream
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	1857 bp upstream
Rr403350	regulatory region 403350	1604 bp upstream
Rr468112	regulatory region 468112	1367 bp proximal
Tssr113934	transcription start site region 113934	1768 bp upstream
Tssr113935	transcription start site region 113935	1803 bp upstream
Tssr113936	transcription start site region 113936	1849 bp upstream
Tssr113937	transcription start site region 113937	1891 bp upstream
Tssr113938	transcription start site region 113938	1907 bp upstream
Tssr113939	transcription start site region 113939	1930 bp upstream
Tssr116711	transcription start site region 116711	1605 bp downstream
Tssr116712	transcription start site region 116712	1631 bp downstream