rs234705396 SNP Detail

Summary

• ID
  rs234705396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164909888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTACATACC TCTAGCACTT
  TCTGATATAC ATAAATAAAA ATAGATACAA ATTAAAAGAC ATTAAAAAAA AAAGTAAGAA
  GATAGCTGGG GGTGGGGCTC AGTGGTGGAG CAGTTGTCCA GCATGCTGAG GTCCTGGGTT
  AGACCCCCAC ACTTGCCTAG CATATGTGAG GTCCTGGGTT AGACCCCCAC ACTTGCCTAG
  Y
  ATATGTAAGG TCCTGGGTTA GACCCCCACA CTTGTCCAGG ATATATGAGG TCCTGGGTTA
  GACCCCCACA CTTGCCTAGT ATATGTGAGG TCCTGGGTTA GACCCCCACA CTTGTCCAGG
  ATATGTGAGG TCCTGGGTTA GACCAGTGCC ACAAAGTAAA AAAGAAAATA AAAGTGCAGT
  CTCTTTGCTT TTTCTCAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356446834	MGP_WTSI_2_164893468	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234705396					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356446834	MGP_WTSI_2_164893468	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164909888 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Rr569807	regulatory region 569807	942 bp proximal
Tssr21714	transcription start site region 21714	1284 bp downstream
Tssr21715	transcription start site region 21715	1250 bp downstream
Tssr21716	transcription start site region 21716	1200 bp downstream
Tssr21717	transcription start site region 21717	1107 bp downstream
Tssr21718	transcription start site region 21718	1060 bp downstream
Tssr21719	transcription start site region 21719	966 bp downstream
Tssr21720	transcription start site region 21720	773 bp downstream
Tssr21721	transcription start site region 21721	728 bp downstream
Tssr21722	transcription start site region 21722	131 bp upstream