rs234725756 SNP Detail

Summary

• ID
  rs234725756
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100580510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTCTTG GAGTCCTCAA
  AGCAATGTCT GGTGACATCC CTGCCTCGTG TCTTCTCAGT GACACTTACA TTCCCACCTT
  CCTGTCCTGC TCTGTCCCCA GCCCTACCAG CTCATCCCCT GGAACCATCC CATGGTGATG
  TGAGGACAGC AGAGACCTCT CCTGTGTCTT GTACCTGCAT CTATGGCCAC CCAGTGTGTT
  Y
  ACTCTGATTC AGTCTGCAGA GGTGCAGCGA CCACCAAAGC AAGGTCAGGG ACCTCTGACT
  CAACTATCTC ATGTCCTCCT CCTTTAATGT ATCGGAGACT TGATCTTTGG TTCCCTAGGT
  CATAGGTCTC AGGCTATACT GCCTAGGACC ACAGAAGAAG ATGCCCTAGA CACCTAGCCA
  TTTCACCAAA CTTCAGTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395181710	MGP_WTSI_15_100513060	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234725756					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395181710	MGP_WTSI_15_100513060	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100580510 () rs orientation: forward

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Gm62586	predicted gene, 62586	within coordinates
Rr301613	regulatory region 301613	291 bp proximal
Rr301614	regulatory region 301614	1291 bp proximal
Rr312498	regulatory region 312498	within coordinates
Tssr133155	transcription start site region 133155	1949 bp upstream
Tssr133156	transcription start site region 133156	1980 bp upstream
Tssr133157	transcription start site region 133157	1996 bp upstream
Tssr136477	transcription start site region 136477	1365 bp upstream
Tssr136478	transcription start site region 136478	1044 bp upstream
Tssr136479	transcription start site region 136479	710 bp upstream
Tssr136480	transcription start site region 136480	698 bp upstream
Tssr136481	transcription start site region 136481	678 bp upstream
Tssr136482	transcription start site region 136482	672 bp upstream
Tssr136483	transcription start site region 136483	655 bp upstream
Tssr136484	transcription start site region 136484	588 bp upstream
Tssr136485	transcription start site region 136485	558 bp upstream
Tssr136486	transcription start site region 136486	203 bp downstream
Tssr136487	transcription start site region 136487	291 bp downstream
Tssr136488	transcription start site region 136488	319 bp downstream
Tssr136489	transcription start site region 136489	351 bp downstream
Tssr136490	transcription start site region 136490	380 bp downstream
Tssr136491	transcription start site region 136491	673 bp downstream
Tssr136492	transcription start site region 136492	1982 bp downstream