rs234726581 SNP Detail

Summary

• ID
  rs234726581
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:85388469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATCCTAA CGGTATTCTC
  TGGTAACTTC AATATTCCAC TTCTTTACTG CAAGCCCTGT AATTCTCAGA ACTGCAATTG
  AGATAAGCCC TGTAACAGGT CAGCAGGGTT AAAAGGTTAC CCACTTTCCC AGGAGAAGTG
  GGAAAGACTT TAGATGATAA ACAAGTATTT TTCCTGTTTA CAAGCATTTG TACCCACCCC
  M
  CCCCCGCCCC CGCCACTGGC AATCAGGCCC AGAGCCTTCT GTATGGTAGG TAGGCACTGT
  AAACTGGGGT ACACTTTCCA GAACTGCCTT GAGGTACCTA AAACTTCCAC CGAATGAACC
  TTGGCTTTGA TTTTACAACA TATATATTTC AAGTATTTAC TATCTGTGAC TTTCCCAGAT
  GTCCAAGTTA AACCCCGTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BR/cdJ	CAST/EiJ	CE/J	DBA/1J	FVB/NJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss386733671	MGP_WTSI_12_86682645	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BR/cdJ	CAST/EiJ	CE/J	DBA/1J	FVB/NJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs234726581					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386733671	MGP_WTSI_12_86682645	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85388469 () rs orientation: forward

Symbol	Name	Function Class
Rr387556	regulatory region 387556	1046 bp upstream
Rr469855	regulatory region 469855	1843 bp distal
Rr469856	regulatory region 469856	68 bp distal
Rr469857	regulatory region 469857	348 bp distal
Rr469858	regulatory region 469858	719 bp proximal
Tmed10	transmembrane p24 trafficking protein 10	mRNA-UTR
Tssr114384	transcription start site region 114384	1994 bp downstream
Tssr117069	transcription start site region 117069	109 bp upstream
Tssr117070	transcription start site region 117070	75 bp upstream