rs234758722 SNP Detail

Summary

• ID
  rs234758722
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91031524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gaatcactt gacattatat gcaaaactat
  attctgtgtt catgtgtaga cacatttttt ttggagagag ggctaatttt tcatgtgatt
  tataggaaac ctgtgattta aacagttaag aaATagccag gcaaggtggt gcatgccttt
  R
  atcccaacac ccagcctggt ccacagagtt ccaagacagc cagagctaca cagagcaacc
  ctgtctcaaa aatcaaaaTA ATAAGAGAGA AAAGAGAAAA GAAAATTAAG AACTGAGGCT
  GAggggctgg tgaaatggct cagtgggtaa                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320391966	CHEV_2_91041336	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234758722					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91031524 () rs orientation: forward

Symbol	Name	Function Class
Acp2	acid phosphatase 2, lysosomal	1706 bp upstream
Cpgi11901	CpG island 11901	1412 bp proximal
Gm13783	predicted gene 13783	within coordinates
Gm23390	predicted gene, 23390	912 bp downstream
Nr1h3	nuclear receptor subfamily 1, group H, member 3	within coordinates
Rr367226	regulatory region 367226	1542 bp upstream
Rr560670	regulatory region 560670	1017 bp proximal
Rr560671	regulatory region 560671	1589 bp proximal
Rr560672	regulatory region 560672	1637 bp proximal
Tssr18869	transcription start site region 18869	1613 bp upstream
Tssr18870	transcription start site region 18870	1724 bp upstream
Tssr25175	transcription start site region 25175	1464 bp downstream