rs234778296 SNP Detail

Summary

• ID
  rs234778296
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9675346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGAGCTGTT TGTGTCGTGT
  CTTCACCGCC TCCCCCTCTT CCCCAGTCCT CGCTGCCTTC CTGGTCTCCG TTCAGACAAA
  ACCCGGACTG GATTTTTTTC CCCAGACCCG CGCTCTCTGA AAATCTGCCG GCTTCCCAGC
  AGTTGGCTGG GACACTGAGG CCACCCTTGC CCCTGGGCCC ATGTCTCCCT CTGGTGGGAA
  R
  AGCGTAGGTT TAGACGGCAG GAAGGTGTTT GCTTAAGAGA TTTGCTCAAG AGTGGTTCTC
  AGATGGCGAC CACTGGTGCT CAAGTGGAGT TCGACCAGGT GTGCCAACCC CAGGTTTGGG
  GTCAGTTCCC AGCCTGAGTC CTCAGTCATG GAGATTCCTG CAACATTTCC CTGGCCCTCT
  CTACCAGGTT CCTTTGAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356928745	MGP_WTSI_3_9610286	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234778296					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356928745	MGP_WTSI_3_9610286	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9675346 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12974	CpG island 12974	within coordinates
Gm56803	predicted gene, 56803	1303 bp downstream
Rr69501	regulatory region 69501	255 bp proximal
Rr73453	regulatory region 73453	1255 bp proximal
Rr78141	regulatory region 78141	within coordinates
Tssr28346	transcription start site region 28346	1462 bp downstream
Tssr28347	transcription start site region 28347	1445 bp downstream
Tssr32578	transcription start site region 32578	246 bp upstream
Tssr32579	transcription start site region 32579	200 bp upstream
Tssr32580	transcription start site region 32580	162 bp upstream
Tssr32581	transcription start site region 32581	39 bp upstream
Zfp704	zinc finger protein 704	201 bp upstream