rs234804332 SNP Detail

Summary

• ID
  rs234804332
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28394573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gactaagat gcaggccagc caaggccacg
  tggtgggatg acaactttta tctCTTCCTT CAGACAAATG GTTTCTGTGT AATGGAGAGG
  AAACGAACCG AATACCATCT GCAAGGAAGA GCTATCTGCC CATATGGTAA AGGGTGGTGG
  Y
  GCTGAGCAGA CATCCAGGTC ACTCGGAATT CTAGTATTTT CAACTCACCA GAAAACTAAA
  AGTGATCCTG AACTTTTTCA TTGAGTATGT GTGTGCATTT GTGAGTGTAT ATAAGCAAGC
  ACTGTCtgtg tgtgtgtgtg tgtaagcatg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325352115	CHEV_17_28312544	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234804332					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28394573 () rs orientation: forward

Symbol	Name	Function Class
C230013L11Rik	RIKEN cDNA C230013L11 gene	within coordinates
Cpgi8870	CpG island 8870	952 bp proximal
Rr339474	regulatory region 339474	427 bp proximal
Scube3	signal peptide, CUB domain, EGF-like 3	745 bp downstream
Tssr143392	transcription start site region 143392	1531 bp upstream
Tssr143393	transcription start site region 143393	1797 bp upstream
Zfp523	zinc finger protein 523	1563 bp upstream