rs234809241 SNP Detail

Summary

• ID
  rs234809241
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70989651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCTGCAGC TGCGAGTCCC
  AGGGCGCACG CAGGTGTCTG CTAGGGGGAA AAAAAAAACG AGGACACCTC AGTGAAAATG
  CGGGCACTGC AGAGCTCAGC CAAGGGCGGA ATGCACTTGC AGCCATCAGA CTCTGCTGGT
  CCTAGCGCCA GGACTCACCT GCTCACTGAC CTGCGCCAGC AGCAGCACCC AGAGCGCAGC
  R
  CAACCTCGGG ACTCCATGGC CCCGGTGCCC GAGGGCTCAC AGGACTCAGC TCAGCAGTCT
  AGACTGGGTC ACTGGATAGT CCCGGTGTTA GCAGTATGCT AGGGTGCAAA GGACCGACCC
  GGCAAAATCG CAGGGTTTCC AGGCAGCGAT TCCACCATGC ACATCAGAGT TATCACTGCA
  GCTTCGTTCG GCACCGGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324417473	CHEV_13_70980410	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234809241					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70989651 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Cpgi5821	CpG island 5821	within coordinates
Gm36529	predicted gene, 36529	within coordinates
Rr482298	regulatory region 482298	1377 bp distal
Rr482299	regulatory region 482299	1072 bp distal
Rr482300	regulatory region 482300	1145 bp distal
Rr482301	regulatory region 482301	872 bp distal
Rr482302	regulatory region 482302	822 bp distal
Rr482303	regulatory region 482303	190 bp proximal
Rr482304	regulatory region 482304	269 bp proximal
Tssr123158	transcription start site region 123158	171 bp downstream
Tssr123159	transcription start site region 123159	197 bp downstream
Tssr123160	transcription start site region 123160	230 bp downstream
Tssr123161	transcription start site region 123161	258 bp downstream