rs234814471 SNP Detail

Summary

• ID
  rs234814471
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138232753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGAAAAA CTAAATAAAA
  AGCAACTTGT CTTAGGACCT CAGCTAAGCA AATGAAGCCT TCTTGCGTGT GCTGAGCCTG
  CAGTTCTCAA CCTTCTAGGA AAGATGGGAG GACTGGGCGA CAGAAGGCAC AGCAGGAATG
  CCCCGCAGTG AGTGCAACCG GAGCTCTGCC CGCTGCCCAG CAGAGGCCTA AATCCAACTC
  K
  GCAGGAAGCG CCCGCGGCGC CGGGAGCCAC GCACCCTCGC CAGCGACCAC GTGATCACTT
  TTTTTTTTTT TGGAAGAAAA AAAAAAACTT CTTGCCTTAA GAAAAAAAAA AAAAAAAAAA
  AAAAAAAAGA CTCCACTTCC CAGAAGCCTC TCCTTCCCCA AGCAGCTGCA GTCTTGCGCA
  GGCGCCGCTA GGGCCAAACG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359912465	MGP_WTSI_3_138189956	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234814471					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359912465	MGP_WTSI_3_138189956	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138232753 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13876	CpG island 13876			within coordinates
Eif4e	eukaryotic translation initiation factor 4E			Intron
				mRNA-UTR
Gm64814	predicted gene, 64814			744 bp upstream
Mir1956	microRNA 1956			507 bp downstream
Rr398072	regulatory region 398072			within coordinates
Rr586156	regulatory region 586156			803 bp distal
Rr586157	regulatory region 586157			254 bp distal
Rr586158	regulatory region 586158			within coordinates
Rr586159	regulatory region 586159			67 bp distal
Rr586160	regulatory region 586160			315 bp proximal
Rr586161	regulatory region 586161			652 bp proximal
Tssr31989	transcription start site region 31989			814 bp downstream
Tssr31990	transcription start site region 31990			556 bp downstream
Tssr31991	transcription start site region 31991			534 bp downstream
Tssr31992	transcription start site region 31992			471 bp downstream
Tssr31993	transcription start site region 31993			441 bp downstream
Tssr31994	transcription start site region 31994			410 bp downstream
Tssr31995	transcription start site region 31995			361 bp downstream
Tssr31996	transcription start site region 31996			252 bp upstream
Tssr31997	transcription start site region 31997			1602 bp upstream
Tssr35898	transcription start site region 35898			738 bp upstream
Tssr35899	transcription start site region 35899			29 bp upstream
Tssr35900	transcription start site region 35900			within coordinates