rs234833204 SNP Detail

Summary

• ID
  rs234833204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:40490547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTCTTT TTCTATTATT
  ATTTTGACGA CTCCCGAGTT GCGCCCATGC TCTTGTCAGC TTCGTTTTAG GCGTAGCACA
  GCCAGGCAGA AGAAAATGGG GCAAAGCGTG CTCCGGGCGG TCTTCTTTTT AGTCCTGGGG
  CTTTTGGGTC ATTCTCACGG AGGATTCCCC AACACCATCA GCATAGGTAA GCTCCCCAGA
  R
  CCAGCCAGAG GGGGCCAGGC TCTTCTGCAT TTGAAACCCA CTACCCTAGT GGGGCTGGGG
  GTATCGCAAC ATGAGTCCCT GTCCTGCATG GTTTGGGGAC GGTGTCTAGG GATGGGGGAC
  TGAGCTGAGA TATTGGAGAC CTGAGCTGCA AAGAACTGAC GAGTATGGGG AGCATCCAAG
  ATGAGGGAAG GGGTCTCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403322484	MGP_WTSI_X_38754847	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs234833204					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403322484	MGP_WTSI_X_38754847	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:40490547 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gria3	glutamate receptor, ionotropic, AMPA3 (alpha 3)			Intron
				Noncoding-Transcript-Variant
Rr394967	regulatory region 394967			within coordinates
Rr690837	regulatory region 690837			728 bp distal
Rr690838	regulatory region 690838			95 bp distal
Tssr160796	transcription start site region 160796			1067 bp downstream
Tssr160797	transcription start site region 160797			1002 bp downstream
Tssr160798	transcription start site region 160798			970 bp downstream
Tssr160799	transcription start site region 160799			941 bp downstream
Tssr160800	transcription start site region 160800			837 bp downstream
Tssr160801	transcription start site region 160801			785 bp downstream
Tssr160802	transcription start site region 160802			763 bp downstream
Tssr160803	transcription start site region 160803			470 bp downstream
Tssr160804	transcription start site region 160804			243 bp downstream
Tssr160805	transcription start site region 160805			105 bp downstream
Tssr160806	transcription start site region 160806			45 bp downstream