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rs234835770 SNP Detail
Summary
  • ID
    rs234835770
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:149982309 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTTAAGCTGT CAGGTTTGTA
CCGACATGGA GTAAACAGCT ATCATAAACG TAAATCTCCA AAACTAGTAG AAATTATGTC
ATGATTGATG GTTAAGATAC CATGTCAGGG ATTGTCTTTT CTTAGAAGTA GTGAAAGCTA
CTTACTATGA CAATCAGACC TTCCTTGTAT GTCAAAATGC TGGTGTGGAA GGTGGTGGAG
Y
CCGTGCTGCT CTGTCTTAAC TATGAGTGTG AGCTTTAAAG CTCGTTGATG AGTGGTAGCC
AGCAAAGCCT AGAGCAACAA AAGCTTCTAC AAAGGAACTA ACCAAGAACA AAGAAGGGTT
CCCAATTAAA GATCACATTC AGGGTTAAAC TTCCAAAGGA GACATCCTGA TCCTGGTTTT
GTGCTGGCCT GGTACTCAGT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss351888779 MGP_WTSI_1_151953688 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs234835770 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss351888779 MGP_WTSI_1_151953688 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149982309 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ptgs2 prostaglandin-endoperoxide synthase 2 within coordinates
Tssr9265 transcription start site region 9265 1984 bp downstream
Tssr9266 transcription start site region 9266 1895 bp downstream
Tssr9267 transcription start site region 9267 1560 bp downstream
Tssr9268 transcription start site region 9268 1490 bp downstream
Tssr9269 transcription start site region 9269 1153 bp downstream
Tssr9270 transcription start site region 9270 1122 bp downstream
Tssr9271 transcription start site region 9271 1099 bp downstream
Tssr9272 transcription start site region 9272 1068 bp downstream
Tssr9273 transcription start site region 9273 1024 bp downstream
Tssr9274 transcription start site region 9274 1004 bp downstream
Tssr9275 transcription start site region 9275 972 bp downstream
Tssr9276 transcription start site region 9276 958 bp downstream
Tssr9277 transcription start site region 9277 902 bp downstream
Tssr9278 transcription start site region 9278 881 bp downstream
Tssr9279 transcription start site region 9279 863 bp downstream
Tssr9280 transcription start site region 9280 763 bp downstream
Tssr9281 transcription start site region 9281 743 bp downstream
Tssr9282 transcription start site region 9282 709 bp downstream
Tssr9283 transcription start site region 9283 694 bp downstream
Tssr9284 transcription start site region 9284 682 bp downstream
Tssr9285 transcription start site region 9285 668 bp downstream
Tssr9286 transcription start site region 9286 589 bp downstream
Tssr9287 transcription start site region 9287 73 bp downstream
Tssr9288 transcription start site region 9288 34 bp upstream
Tssr9289 transcription start site region 9289 51 bp upstream
Tssr9290 transcription start site region 9290 207 bp upstream
Tssr9291 transcription start site region 9291 253 bp upstream
Tssr9292 transcription start site region 9292 372 bp upstream
Tssr9293 transcription start site region 9293 401 bp upstream
Tssr9294 transcription start site region 9294 421 bp upstream
Tssr9295 transcription start site region 9295 437 bp upstream
Tssr9296 transcription start site region 9296 459 bp upstream
Tssr9297 transcription start site region 9297 468 bp upstream
Tssr9298 transcription start site region 9298 494 bp upstream
Tssr9299 transcription start site region 9299 516 bp upstream
Tssr9300 transcription start site region 9300 533 bp upstream
Tssr9301 transcription start site region 9301 667 bp upstream
Tssr9302 transcription start site region 9302 697 bp upstream
Tssr9303 transcription start site region 9303 759 bp upstream
Tssr9304 transcription start site region 9304 783 bp upstream
Tssr9305 transcription start site region 9305 801 bp upstream
Tssr9306 transcription start site region 9306 813 bp upstream
Tssr9307 transcription start site region 9307 817 bp upstream
Tssr9308 transcription start site region 9308 850 bp upstream
Tssr9309 transcription start site region 9309 864 bp upstream
Tssr9310 transcription start site region 9310 895 bp upstream
Tssr9311 transcription start site region 9311 907 bp upstream
Tssr9312 transcription start site region 9312 932 bp upstream
Tssr9313 transcription start site region 9313 952 bp upstream
Tssr9314 transcription start site region 9314 963 bp upstream
Tssr9315 transcription start site region 9315 1057 bp upstream
Tssr9316 transcription start site region 9316 1240 bp upstream
Tssr9317 transcription start site region 9317 1517 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory