rs234852595 SNP Detail

Summary

• ID
  rs234852595
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105839322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACAACAC CACAGAGAAA
  CAGCTACTTA CAAATCTAGG TGACAAAACC CAACAAACAT ATTTACCTTT AAAAACAACA
  ATCTAGTCAG GTGTGTTGGC ACTCACTGGA GAGGCTGAGG CAGGAGAATT GCCATGAGGT
  CAAATCTAGC CTGGATTACA CAGAATCTGT CCAAAAAATT CAAAGGGAGC CTGGCATGGT
  R
  TGTTTACATC TCTAATCCCA CAAGTTGGCA GAGGCAGGCC GATCTCTTTA AATTTCAGGA
  GCGCCTGAGT TCCAGGCCAG TCAGGGGTAC ATAGTGAGAC CCTGTCTAAA CAGAACAGAA
  CAGATCAAAA CCAACCAAAA TACGGGCAAG AGGGGTGGCT CAGCAGGTAA AGGTACATAC
  CCCACAACTC TGGAAGGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359121229	MGP_WTSI_3_105734924	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	A	A	A	G	A	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234852595					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	A	A	A	G	A	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359121229	MGP_WTSI_3_105734924	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105839322 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
I830077J02Rik	RIKEN cDNA I830077J02 gene			Intron
				mRNA-UTR
Rr375531	regulatory region 375531			1839 bp downstream
Rr582816	regulatory region 582816			1617 bp distal
Rr582817	regulatory region 582817			384 bp proximal
Rr582818	regulatory region 582818			648 bp proximal
Tssr34937	transcription start site region 34937			729 bp upstream
Tssr34938	transcription start site region 34938			584 bp downstream
Tssr34939	transcription start site region 34939			619 bp downstream
Tssr34940	transcription start site region 34940			632 bp downstream
Tssr34941	transcription start site region 34941			659 bp downstream
Tssr34942	transcription start site region 34942			681 bp downstream