rs234862177 SNP Detail

Summary

• ID
  rs234862177
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123301214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGA CACAGTCTTA TTACACACCA
  R
  ACATCTTTTA TTTAATATAA AATAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320920392	CHEV_3_123210483	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234862177					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123301214 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	373 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	968 bp downstream
Rr397991	regulatory region 397991	531 bp downstream
Rr584523	regulatory region 584523	646 bp distal
Rr584524	regulatory region 584524	511 bp distal
Rr584525	regulatory region 584525	809 bp proximal
Rr584526	regulatory region 584526	1354 bp proximal
Rr584527	regulatory region 584527	1745 bp proximal
Snhg8	small nucleolar RNA host gene 8	within coordinates
Snora24	small nucleolar RNA, H/ACA box 24	372 bp downstream
Tssr31551	transcription start site region 31551	985 bp upstream
Tssr31552	transcription start site region 31552	1023 bp upstream
Tssr35502	transcription start site region 35502	765 bp downstream
Tssr35503	transcription start site region 35503	1350 bp downstream