rs234867441 SNP Detail

Summary

• ID
  rs234867441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70990714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCCTCTAA TTTTTCATTG
  GACAGCAGTG GCCAATTTCA GATTCACTTT AGACTCTGGC TGACCTGCTG GGAGAGCAGG
  TGTGAGGCCA CTGGGTTCCC AGAGCATCCT AGTAGGAAGT CTAGGAGCCC CAGCCTAGAC
  CAGACCAGGT CTATCCAAGA CAACCAGCGA ATGCCCTCTC TCCAGCCCTG CGTCCTGGTC
  Y
  ATCATGACCT GAGTATGTGT TTGAGTATGA GCGTCTTTTG TGACCATCAG TGACTGAGAG
  TGTCTGCTGC AGGGTGGGTA CAGATACAGA CAGCACTGAG CGCACGGGTA GATGTTTCTA
  CACGCGGGAC TGCCAATGAC TGTCCATCCC AGCAGCTGCA CTCCACTTCC TTCTGCCGGT
  TGGTCTCACA TCTCAGGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324417490	CHEV_13_70981473	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234867441					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70990714 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	784 bp upstream
Cpgi5821	CpG island 5821	755 bp distal
Gm36529	predicted gene, 36529	within coordinates
Rr482301	regulatory region 482301	1935 bp distal
Rr482302	regulatory region 482302	1885 bp distal
Rr482303	regulatory region 482303	852 bp distal
Rr482304	regulatory region 482304	294 bp distal
Tssr123158	transcription start site region 123158	879 bp upstream
Tssr123159	transcription start site region 123159	841 bp upstream
Tssr123160	transcription start site region 123160	812 bp upstream
Tssr123161	transcription start site region 123161	785 bp upstream