rs234875084 SNP Detail

Summary

• ID
  rs234875084
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115080497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGTTGCCA CAGTTCCTGC
  TTTTTCTGAC ACTCACTACA GACTTGGAGA CGAGGAAGTG AGTTATTGCT GTGACTGTGT
  TTTAGAAAGA AAGTACCTTA TGTCCCCATT CCTTGTGCCT TCACCATGTA ATCATCCACT
  CAGGCCACCT TGTGATGCCA CAGCCGCCTG GACAGTTAGG CCTGTGTGCC TCAGGAGCTC
  Y
  GCTTCACACA CCTCCCCCTT TTCTCCTTCC CATCTTCTGT GTGCTTTATC TGGGGTCTTT
  GCACTTTGCC ATAAACAAGC ACTGTGATTT TGTTTTTATC TTAATTGTGA AGGAAGAGAG
  ATGAGAAAGA TGGGTGCTGG TGGCGACAGG GGGGTGTTAA TCAGGTGGTG GTCAGGGTTC
  TGAGGAAAGC AGCCCTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384823291	MGP_WTSI_11_115050985	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234875084					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384823291	MGP_WTSI_11_115050985	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115080497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4111	CpG island 4111	1704 bp distal
Nat9	N-acetyltransferase 9 (GCN5-related, putative)	1815 bp upstream
Rr459795	regulatory region 459795	1838 bp distal
Rr459796	regulatory region 459796	1396 bp distal
Rr459797	regulatory region 459797	1061 bp distal
Rr459798	regulatory region 459798	637 bp distal
Rr459799	regulatory region 459799	45 bp distal
Tmem104	transmembrane protein 104	within coordinates
Tssr3729	transcription start site region 3729	991 bp upstream
Tssr3730	transcription start site region 3730	44 bp downstream
Tssr111734	transcription start site region 111734	1835 bp upstream
Tssr111735	transcription start site region 111735	1803 bp upstream
Tssr111736	transcription start site region 111736	897 bp upstream