rs234878917 SNP Detail

Summary

• ID
  rs234878917
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:73954427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TCAACTGGAA
  ACTCGGGCGG GATGGGCGGC GACCGGGTCC AGCCACGCAG CTAAGGAGTA AGCGAGCCTC
  AGAGAACTCT ATAGAGAGCC GGGGCGGTGC GAGCCAGGCT CGGACCCAAG CTTGGCAGCC
  CACTCGCTCC AGCAGCGCCT CCCAAAGCCA GACGCAGCTT TCCATTGAAG GTGCAGAGAC
  C
  CCCCCACCCC CAGACCTGGG CTCAGCCGCA CCCGTCGCTC GCCCCTTTTT CTTCCCTCCC
  TAGCTGCACA CAGACAAGCA CGTGAGCGGG GCAGCTCGTC CCAGCTGGGG CTCAGCTGAC
  CTCCTCCTGA TTGGCTGAGA GCAACGTGGG CTGGGGTGGG GCCTGGCCGC CTGCGTCCTT
  CACCATTGGC TCTCCGGGAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss386495899	MGP_WTSI_12_75008640	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs234878917					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386495899	MGP_WTSI_12_75008640	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73954427 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4761	CpG island 4761	within coordinates
Hif1a	hypoxia inducible factor 1, alpha subunit	Intron
Rr467871	regulatory region 467871	within coordinates
Rr467872	regulatory region 467872	262 bp proximal
Rr467873	regulatory region 467873	317 bp proximal
Rr467874	regulatory region 467874	1561 bp proximal
Tssr113838	transcription start site region 113838	306 bp upstream
Tssr113839	transcription start site region 113839	321 bp upstream
Tssr113840	transcription start site region 113840	402 bp upstream
Tssr113841	transcription start site region 113841	507 bp upstream
Tssr113842	transcription start site region 113842	532 bp upstream
Tssr113843	transcription start site region 113843	722 bp upstream
Tssr113844	transcription start site region 113844	1959 bp upstream