rs234883051 SNP Detail

Summary

• ID
  rs234883051
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31147189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTGAAGA ACAATGGTGA
  AAATGTCCCC AAAGCTTGGT TTTGATTGAC TCTAGCCACA GGGCTGTGAC TAGTGTCTCA
  ATTGATATAC ATAAAACCAC CCTTTTCTCA AAAACAGATT CCTCGAGAGG ACAAAAGAAC
  AGGAAGATAA TGTATTTGAT TTTTCTAAAA AGACTATTAT CCAATTAATT TTGTTTCTCA
  R
  GCCTTTGACC ATGCTAGCAA GTAATTACTT TTATGGCTGG AAAGATGACT ACTAAATACT
  TAGCATTAAT TGCAGTTTCA GACTCGCTTA AGACACACAC ACCTCAGTTA TCTTGGTTTC
  TAAATTTGTT TTTTTCTGGT TAGATCCAGA GCCAGGTGCA AGGAGGCCAG GTGCTCAGTC
  TCAGGACTAT CCTGGCGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357433238	MGP_WTSI_3_30991962	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234883051					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357433238	MGP_WTSI_3_30991962	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31147189 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13048	CpG island 13048	666 bp proximal
Gm65753	predicted gene, 65753	within coordinates
Gm65762	predicted gene, 65762	857 bp upstream
Rr397631	regulatory region 397631	476 bp upstream
Rr574878	regulatory region 574878	1665 bp distal
Rr574879	regulatory region 574879	367 bp proximal
Rr574880	regulatory region 574880	1237 bp proximal
Rr574881	regulatory region 574881	1528 bp proximal
Tssr28705	transcription start site region 28705	1311 bp downstream
Tssr28706	transcription start site region 28706	852 bp upstream
Tssr28707	transcription start site region 28707	977 bp upstream
Tssr28708	transcription start site region 28708	1626 bp upstream
Tssr28709	transcription start site region 28709	1654 bp upstream
Tssr28710	transcription start site region 28710	1679 bp upstream
Tssr28711	transcription start site region 28711	1897 bp upstream
Tssr28712	transcription start site region 28712	1921 bp upstream