rs234897828 SNP Detail

Summary

• ID
  rs234897828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:109722924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCCCTGC CGTTTTGTTG
  GTCTGTGTGT CAAAACTAAT GTGTCTTAAA GCAGAGTGTG TTCAGAACCC GTTTGGAATA
  GCCGGTGAAT ATGCATACTG TCATGGTAAT ACTTGAGAAG TCACAAAAAC ATTAAGAGTA
  GACAATTTCC AAAATAAAGA CAGGCATGGT ACCTGTAAGT TTAACACGGG AAATAAGCCC
  Y
  CCTTTTTTGA GAGAACGTTT CTCTGTGTAA CCTTGGCTGT TCTGGAACCT ACTTTGTAGG
  AACTAGGAAC TCAGAGATCC TCCTGTCTCT GCCTCCCGAG TGCTGGAACT AAAGGCGCCC
  TACCATGCCC CTCGACATAA GCCTTTTAAA GGGAATCTAT TGATTTCCAT GCAACTTTAG
  TCTTAAATCT CGAACATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322394509	CHEV_7_117267231	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234897828					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109722924 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19571	CpG island 19571	325 bp distal
Gm45819	predicted gene 45819	1977 bp downstream
Rr400541	regulatory region 400541	1644 bp downstream
Rr400542	regulatory region 400542	163 bp upstream
Rr653190	regulatory region 653190	1661 bp distal
Tssr68487	transcription start site region 68487	1582 bp downstream
Tssr68488	transcription start site region 68488	1422 bp downstream
Tssr68489	transcription start site region 68489	1394 bp downstream
Tssr68490	transcription start site region 68490	1138 bp downstream
Tssr68491	transcription start site region 68491	939 bp downstream
Tssr74250	transcription start site region 74250	814 bp upstream
Tssr74251	transcription start site region 74251	773 bp upstream
Tssr74252	transcription start site region 74252	688 bp upstream
Wee1	WEE 1 homolog 1 (S. pombe)	Intron