rs234901542 SNP Detail

Summary

• ID
  rs234901542
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72536065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGTGTGC CTCAGAATGT
  TCCAGATGTT TGTTTTGGGA CATGAAGAAA AAGACTGTGG TGGCTATAAA GGCTCGGTTG
  AAGAAAGAGT CTCAAATATA GTCTAAAAAA GACCAGTATG TTTCTGGAAA AAAAAAAAAA
  CAATATGGGT AAAAGGAAGG TATAGGACAC CGACTGGACT GAGAGAGAAA GGGAGAAGGG
  Y
  AGTGGACCAC CACAGCAGCA AACGTTGGAT GGCTTTCTGG GTCCCCACAG TTTCCTCTTG
  CTTCCCAACT CCCAAAGACC AAGAATAGTG GCAGAGGCCT TGAGCTAGTC ATGCAGAACA
  GCTGGAATTT GTAGTTAGCG GTGCAAATTC ACAACCTGCT TTCTATGGAA GTGGGAAGAG
  CAAGCAATCA GCAGAGCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403771557	MGP_WTSI_X_70737798	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs234901542					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403771557	MGP_WTSI_X_70737798	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72536065 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4564	regulatory region 4564	1265 bp distal
Rr4565	regulatory region 4565	936 bp proximal
Rr6090	regulatory region 6090	736 bp proximal
Rr7746	regulatory region 7746	1274 bp distal
Rr10758	regulatory region 10758	1092 bp proximal
Tssr5633	transcription start site region 5633	807 bp upstream
Tssr161208	transcription start site region 161208	1672 bp downstream
Tssr161209	transcription start site region 161209	1649 bp downstream
Tssr161210	transcription start site region 161210	1630 bp downstream
Tssr161211	transcription start site region 161211	1584 bp downstream
Tssr161212	transcription start site region 161212	1518 bp downstream
Tssr161213	transcription start site region 161213	1464 bp downstream
Tssr161214	transcription start site region 161214	1094 bp downstream
Tssr161215	transcription start site region 161215	455 bp downstream
Tssr161216	transcription start site region 161216	437 bp downstream
Tssr161217	transcription start site region 161217	398 bp downstream
Tssr161218	transcription start site region 161218	385 bp downstream
Tssr161219	transcription start site region 161219	324 bp downstream
Tssr161220	transcription start site region 161220	267 bp upstream
Tssr161221	transcription start site region 161221	281 bp upstream
Tssr161222	transcription start site region 161222	345 bp upstream
Tssr161223	transcription start site region 161223	511 bp upstream
Tssr161224	transcription start site region 161224	551 bp upstream
Tssr161225	transcription start site region 161225	735 bp upstream
Tssr161226	transcription start site region 161226	777 bp upstream
Tssr161227	transcription start site region 161227	821 bp upstream
Tssr163544	transcription start site region 163544	1023 bp upstream
Tssr163545	transcription start site region 163545	396 bp upstream
Tssr163546	transcription start site region 163546	332 bp upstream