rs234922527 SNP Detail

Summary

• ID
  rs234922527
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:27751307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTGCAGG GGCGGCGTCT
  GGTGTAGTGC AGAACAACAC GTTCCTCGGG CCTGGGGGGC AGGGCACAGC GTTGAACTGG
  CCCAAGTGGC GGAGGATGAG GAAGAGGAAG CTGAGTTGGC GCGGGTGGGG GCCGGCCTCC
  GGGAACCAGG CATTCCCAGC TTGCCCTGGA GCCCCAGTAT AGACGCTGAT GAAACCTACC
  Y
  GCCTGTTTGC ATGATGAAAT CCTCGTGGCT CACTACTTCC CTCCCAATCC TCGCGCCGCT
  CCCACCCACT TTTGCGCTTC TCCCCTCCCC GGTCTCCTCC CCCAACTACT CCTCTTACAA
  CTCAAAAACA AGAGGAATCC TGGCGCGGTG ATGAACCTTG GGCTACTGCT GGCGCAGCCG
  GGCCACATGC CTATTTTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374046278	MGP_WTSI_8_28371751	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234922527					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374046278	MGP_WTSI_8_28371751	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:27751307 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20220	CpG island 20220	within coordinates
Eif4ebp1	eukaryotic translation initiation factor 4E binding protein 1	within coordinates
Rr186444	regulatory region 186444	within coordinates
Rr186445	regulatory region 186445	1893 bp proximal
Tssr76776	transcription start site region 76776	947 bp downstream
Tssr76777	transcription start site region 76777	909 bp downstream
Tssr76778	transcription start site region 76778	861 bp downstream
Tssr76779	transcription start site region 76779	817 bp downstream
Tssr76780	transcription start site region 76780	770 bp downstream
Tssr76781	transcription start site region 76781	144 bp upstream
Tssr76782	transcription start site region 76782	1467 bp upstream