rs234973064 SNP Detail

Summary

• ID
  rs234973064
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31387441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGTTCCT AGCAGGCAAG
  GCTGCTTGGA TCTCCAAAAT GAGCAGTGGT GTATGAATGA GCTCGCGGTT GCAATGAAAA
  GGCTGTGGTC CCCAGCCATC AGCAGGTGGA CAGAGCAGCT GGGGACAGGA GGCCCCTGGG
  ACGAACTTGA GCAGGCAGGC CCAGACACCC CCCACTCCCC CCACACCCCC ACTCCCCCAC
  Y
  CCCCACGCCC CCATCCTAAT GGTGGCAAGT ATCCAGGCTT CAGGCTTGGG CTTAGGGGAA
  GCTGGAGCCT CTGGAGGCAA GGGAATTTTG AGAACATCCT GGGCAGCCAG CAGCCCCTCC
  GCCTCTGCCG AAGGAAGAGA GGCCCATTTT CTAACGCACC CAAGGAAAAA TATACATAAA
  GGTTGATGTG TTTTCAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss353540297	MGP_WTSI_2_31352949	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs234973064					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353540297	MGP_WTSI_2_31352949	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31387441 () rs orientation: forward

Symbol	Name	Function Class
Ass1	argininosuccinate synthetase 1	Intron
Rr406727	regulatory region 406727	1882 bp proximal
Rr554653	regulatory region 554653	1657 bp distal
Rr554654	regulatory region 554654	within coordinates