rs234991260 SNP Detail

Summary

• ID
  rs234991260
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:75140759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCCAGAA AGGCCTGCCG
  ACAGAAAGGT CCCCAGCAGT CCTTGTCCTC AGAGCCAAAC CCGTCCTGCA GGCCCTCAGG
  ACAGTTTTGA TCACCCCTGT CGCCTCTGAG TGAGGATTTC CTTTCTCGGA CCCCATTCAG
  AGGCTTTCTG GAAGCCTTCT GTCCTGGTGC AATGAAGCAA AGCTGCCTCT TCCACCTCCC
  Y
  CCCCCCCCCC CAAATGTCCC AAAGGGAAAT GACATTCACC AAGAATTTGG GCAAACTTTT
  TTTTTTTTAA GAAGAAGAAG AAATAGTGTG AAAATTGCCC AGATCCTTGC TCCTCAAAGC
  ATCTCAGAAG CAAACTGCAG GAAGTGGTGG ATTCCGACAT AAAGGACATC GTTTGCCTGC
  CTTATTATCT CATTCTCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	RF/J	RIIIS/J	ST/bJ	SWR/J	WSB/EiJ
ss365482571	MGP_WTSI_5_75376123	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	RF/J	RIIIS/J	ST/bJ	SWR/J	WSB/EiJ
rs234991260					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365482571	MGP_WTSI_5_75376123	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:75140759 () rs orientation: forward

Symbol	Name	Function Class
Gm52777	predicted gene, 52777	109 bp downstream
Tssr46681	transcription start site region 46681	192 bp downstream