rs235002972 SNP Detail

Summary

• ID
  rs235002972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32341196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACCCGTCC CCTTGGCGTC
  GGTCTCTCTC CTCAAGACCT CCCGGATCCT CCCCGCCCGC GCGGACGGCG CACGCAGACT
  TACCCGGAGC TCGCCCTCCG TGCGGTGCAG TCCCAGGCGC CGCAGCCCCA CCGCCAGGTC
  GTTGACACAC AGGCCGCCGT CGCGGTTGAC GTCGAGTGTC TGGAAGAGGC TCCACAGGCG
  Y
  AGCTGGTGGT CCGGGCCGCC ACAGACGGCG CCGCCGCACG GGTCCCCTAC AGAAGCCGGC
  GACGAGGCGG ACGACGAGGC GGTGGCGGCG GCGTCCGGCG GCGGGGAGGC CACGCAGCGG
  CACAACACAC TGCTCACCAT CGGGCGCGAG GCGGGGGCGC CGGACGCCGG GCTGAAGGCG
  GCAGGAGAGC GACCCGAGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353557738	MGP_WTSI_2_32306704	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235002972					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353557738	MGP_WTSI_2_32306704	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32341196 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11510	CpG island 11510	within coordinates
Naif1	nuclear apoptosis inducing factor 1	within coordinates
Rr396886	regulatory region 396886	197 bp upstream
Rr396887	regulatory region 396887	760 bp upstream
Rr554914	regulatory region 554914	717 bp distal
Rr554915	regulatory region 554915	228 bp proximal
Rr554916	regulatory region 554916	311 bp proximal
Slc25a25	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	within coordinates
Tssr17282	transcription start site region 17282	722 bp downstream
Tssr17283	transcription start site region 17283	94 bp downstream
Tssr17284	transcription start site region 17284	990 bp upstream
Tssr17285	transcription start site region 17285	1124 bp upstream
Tssr23522	transcription start site region 23522	184 bp downstream
Tssr23523	transcription start site region 23523	212 bp downstream
Tssr23524	transcription start site region 23524	2000 bp downstream