rs235020509 SNP Detail

Summary

• ID
  rs235020509
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24570975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCACCCTA CAAGCGCTTG
  CCCACTGGAG GTGAGACCTG CGTGGAGTAC TGCGCAGACG CACGATCCGG AATGTTGAAC
  TGGGAGGGGT GCACGCGCTA CGCAGAGCGC CCTCTGTCGG AGCTGGGCAA CATGTGCCAG
  GCACTGCGCA GACGCTGAAT CCAGAGCTTA GGCGAGGCTG AGCCGGCCGG GGGCAAACCC
  S
  GGGCACCTGC AGGGGCGGCC CAGTGCGCAC GCGCGCTCCG ACGCGCCCCC CCACCCCCTC
  CAGGAGCCGG AGCTTCCTGG TGCGTTCTTC CACCCGCGCC TGTCGCAGGC GCCTCCTCTC
  TGCCCCGCCG CCTCAGTTGT CAGCTTCGGC CGCAACCGCC CCAGCAAGGC TGGAGCAGGA
  CCGGGAGTCT AAGGGAGGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397854044	MGP_WTSI_17_24488946	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235020509					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397854044	MGP_WTSI_17_24488946	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24570975 () rs orientation: forward

Symbol	Name	Function Class
Abca3	ATP-binding cassette, sub-family A member 3	22 bp upstream
Abca17	ATP-binding cassette, sub-family A member 17	933 bp upstream
Cpgi8716	CpG island 8716	within coordinates
Rr405082	regulatory region 405082	within coordinates
Rr523280	regulatory region 523280	983 bp distal
Rr523281	regulatory region 523281	within coordinates
Rr523282	regulatory region 523282	761 bp distal
Rr523283	regulatory region 523283	76 bp distal
Rr523284	regulatory region 523284	56 bp proximal
Rr523285	regulatory region 523285	106 bp proximal
Rr523286	regulatory region 523286	1528 bp proximal
Tssr143021	transcription start site region 143021	53 bp downstream
Tssr143022	transcription start site region 143022	33 bp downstream
Tssr143023	transcription start site region 143023	16 bp upstream
Tssr143024	transcription start site region 143024	36 bp upstream
Tssr146725	transcription start site region 146725	937 bp upstream
Tssr146726	transcription start site region 146726	893 bp upstream