rs235021387 SNP Detail

Summary

• ID
  rs235021387
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48590003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGGATTA GGAGACTTTG
  ATGTTTATCC AGTTCAGCTG TTTAGCTATC TTTATGTCTG AGCACACCAA GGCTTCTCTT
  GGGCCCGGTT TCTCTTTGCA CATGAGAATT ATGCCCACGT AACCTTCCCA TCTGCACATT
  TTTACCTGAG GGAGTGGATA GAACTCAAAA ACAAATAAAC AAAACAACTC CCCCCCCCCC
  M
  AAAAAAAAAG CTTGGGCTAT GAGATGGGAC ATGGGGGCTG GGAAAATGGT TTGGATCATG
  ACCCATTCAT TGGCCATTCT TTCTCTTTTC TCCCATCTTA CCCCCCAGGT GGCAGGGCTG
  AGACCTCACC AGCACTGATG CAGTAGGAGG CCTGCAGGGA TGGAGAGTGG CCTGGCTGGC
  AGCATCTCAG GTAAGAGAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ
ss368225401	MGP_WTSI_6_48563068	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ
rs235021387					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368225401	MGP_WTSI_6_48563068	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48590003 () rs orientation: forward

Symbol	Name	Function Class
Gm38804	predicted gene, 38804	within coordinates
Gm44965	predicted gene 44965	within coordinates
Gm45021	predicted gene 45021	within coordinates
Gm67224	predicted gene, 67224	within coordinates
Rr135555	regulatory region 135555	598 bp proximal
Tssr60741	transcription start site region 60741	669 bp downstream
Tssr60742	transcription start site region 60742	680 bp downstream
Zfp775	zinc finger protein 775	within coordinates