rs235028334 SNP Detail

Summary

• ID
  rs235028334
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:16110222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCCTCC TCCTCCCGCC
  GCCGCCGCCC CCTCCCGGAT CTGTGCTCCA GTTCAGAGAA AGGAGAAAAT GTGTGTGTGT
  GGCGAGGGGG AGGGCGAGCA CTGAGCAGCC GCGGCGCGCC TGGCAATCGG GCCGGGTGGG
  CGTCCGGCGG AGGCGGGGGC GGAGGCGGGG AGCGCGCGGC GGCCGGCTGC CCGGTTTGCG
  M
  GCGAGCCGAG TGGGCGCGGG CAGGCCGAGG GCGCCCGGAG CCGAGTCAGG CGGCGGCGGC
  GGCGGCGGCG AGGAGCGGGC GCGCCGGGCG CGCTGAGCCG TCGGCGGTCG CTCGCTGCGG
  GGCCGCCTCG GTGGATGAGC TCGGGCCGCT GGGCGCACAG CCTTGGGCAG CGTCGGCGGC
  GGCGCCTGGA GGGCCGCGCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss401853774	MGP_WTSI_19_16207348	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs235028334					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401853774	MGP_WTSI_19_16207348	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:16110222 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10651	CpG island 10651	within coordinates
Gnaq	guanine nucleotide binding protein, alpha q polypeptide	mRNA-UTR
Rr544688	regulatory region 544688	1600 bp distal
Rr544689	regulatory region 544689	17 bp distal
Rr544690	regulatory region 544690	237 bp distal
Rr544691	regulatory region 544691	158 bp distal
Rr544692	regulatory region 544692	within coordinates
Tssr155379	transcription start site region 155379	137 bp downstream
Tssr155380	transcription start site region 155380	85 bp downstream
Tssr155381	transcription start site region 155381	63 bp downstream
Tssr155382	transcription start site region 155382	within coordinates
Tssr155383	transcription start site region 155383	264 bp upstream
Tssr155384	transcription start site region 155384	443 bp upstream