rs235038699 SNP Detail

Summary

• ID
  rs235038699
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10109160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTGTGTT TTATTTAATT
  CTAATATATT TAATTTTTTT CGTAACACGG TTCTTAAAGA CTTCTCCAGC TTCATCATCT
  TCTTTTAGCT CCCCCAACCC AGTTTTTCAT TCTATTAGAA CTTTTTTCCT TGGCTTAGTA
  ATATATTAGT TGTTAGGCAT TGCTTGAAAT GCACTTCTTG ACATTTCTGC TTTAGAGCAC
  M
  CAGATTTTAA AAAGCACAGC TCGGAGATGC CTTTCCTTAA CTCTTCGTCA GTAACTGCTC
  CTTCACAGGA ATTCGAAGGC TCTGTAGCTG CTTCACCTGG ACCCCGGGGT TTTTGCAGTT
  CTGGAACTAT GTAGTCCAGG CTGGCCTCAA ACTCGAGAGC TGCCTGCTTG AGTGCTGGGA
  TTCAAGGCGT GCACCACTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss348594618	MGP_WTSI_1_10029016	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235038699					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348594618	MGP_WTSI_1_10029016	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10109160 () rs orientation: forward

Symbol	Name	Function Class
Cops5	COP9 signalosome subunit 5	776 bp upstream
Cpgi31	CpG island 31	492 bp distal
Cpgi32	CpG island 32	586 bp proximal
Cspp1	centrosome and spindle pole associated protein 1	within coordinates
Rr395966	regulatory region 395966	1063 bp upstream
Rr407692	regulatory region 407692	1019 bp distal
Rr407693	regulatory region 407693	663 bp distal
Rr407694	regulatory region 407694	183 bp distal
Rr407695	regulatory region 407695	348 bp proximal
Rr407696	regulatory region 407696	741 bp proximal
Rr407697	regulatory region 407697	861 bp proximal
Tssr4	transcription start site region 4	707 bp downstream
Tssr5924	transcription start site region 5924	827 bp upstream
Tssr5925	transcription start site region 5925	862 bp upstream
Tssr5926	transcription start site region 5926	889 bp upstream
Tssr10955	transcription start site region 10955	1041 bp upstream
Tssr10956	transcription start site region 10956	1004 bp upstream
Tssr10957	transcription start site region 10957	967 bp upstream
Tssr10958	transcription start site region 10958	766 bp upstream
Tssr10959	transcription start site region 10959	1072 bp downstream