rs235039335 SNP Detail

Summary

• ID
  rs235039335
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112791272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCT ATTTCCAGAT GGCCAGAATC
  S
  CTTTCCAAGT CTAGGTAAAT GTCTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324171462	CHEV_12_114065863	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235039335					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112791272 () rs orientation: forward

Symbol	Name	Function Class
Cdca4	cell division cycle associated 4	within coordinates
Cpgi5185	CpG island 5185	1021 bp proximal
Gm52009	predicted gene, 52009	418 bp upstream
Gm56552	predicted gene, 56552	1933 bp upstream
Rr387795	regulatory region 387795	1183 bp upstream
Tssr3960	transcription start site region 3960	1804 bp downstream
Tssr115439	transcription start site region 115439	1496 bp upstream
Tssr117911	transcription start site region 117911	1373 bp downstream
Tssr117912	transcription start site region 117912	1699 bp downstream
Tssr117913	transcription start site region 117913	1834 bp downstream