rs235040115 SNP Detail

Summary

• ID
  rs235040115
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19192038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGCTAG CAGGAGCCCA
  GGCGGAGCTG GGGACTGGCC AGGGGTAGCA GGGGAAACCA GCACCCCAAC TCGGCAAGAA
  GCAGGGAGGA CAACAGGGCC AGACTGGGTC GAGCCTTGAG GGGGGAGGGG GGAGACAGGG
  CTGCGCTTCG GGGAACAGGG GCCCGTGCCA TCCGGGAAGA GTCGAGGCCA AGCTGCGGGC
  G
  AGCGGGCGAG CGGGGGACAG CCGGGGCAGC CGAGGAAGGG AGGGGCTGCC GGCGGGCAGG
  GGAGGGGGCT TCCTGGAGGG AAGAGACCGG GCGGAAGCGT TCTGCAGAGG GACCGGAGAA
  GAGTCCAAAG ACAGGGGCGC CCCTAGGGGT CGGGCTGGGC TGGGGCTGTG GGGAGGAGGG
  AGCAGAGAGG CCTCAAAGTC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370749824	MGP_WTSI_7_20043462	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235040115					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370749824	MGP_WTSI_7_20043462	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19192038 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18489	CpG island 18489	within coordinates
Mark4	MAP/microtubule affinity regulating kinase 4	within coordinates
Rr400149	regulatory region 400149	643 bp upstream
Rr643146	regulatory region 643146	within coordinates
Rr643147	regulatory region 643147	698 bp proximal
Tssr64858	transcription start site region 64858	817 bp upstream
Tssr70918	transcription start site region 70918	559 bp downstream
Tssr70919	transcription start site region 70919	615 bp downstream
Tssr70920	transcription start site region 70920	635 bp downstream
Tssr70921	transcription start site region 70921	666 bp downstream
Tssr70922	transcription start site region 70922	688 bp downstream
Tssr70923	transcription start site region 70923	1122 bp downstream