rs235042443 SNP Detail

Summary

• ID
  rs235042443
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:82601285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACAAAAG GCATGAAAGA
  AAATGGAAGC AGTGGTGGGT GCCCACCTTG CTGGCTCTAG CCCTTGCTTC CCTCTGCTGG
  CCGACCTTGG GAAGATGACT CAACTTCTCT GATCTTTGAT TATCATATAA AATAAGCCTG
  TACTCAAGGT TGGCTGTGAG TACAAGCAGG GCATCAGGTG GAAGGGCCTG TGCTCCAGGC
  R
  GGTGCTCCAG GTAGGTGCTC CAGGCAGGTG CTCCAGGCAG GTGCTCCAGA CGGGTGTTCA
  GTGGCTACTA GAAAACAGCA CTGATGTGTC TGCCGTTACA TTTCAAAAAA GAAGTCACCT
  GAGGCTTGGC TGGACTCTGG ACTCCTGTGT TTCAGTCCAG GTACACTGTG TTTTCTAGAA
  CAGAGATTCT AAGACTTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401436706	MGP_WTSI_18_82752552	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235042443					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401436706	MGP_WTSI_18_82752552	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82601285 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm58829	predicted gene, 58829			1462 bp downstream
Mbp	myelin basic protein			Intron
				Noncoding-Transcript-Variant
Rr541827	regulatory region 541827			505 bp proximal
Tssr152152	transcription start site region 152152			948 bp upstream
Tssr152153	transcription start site region 152153			976 bp upstream
Tssr152154	transcription start site region 152154			1090 bp upstream
Tssr152155	transcription start site region 152155			1128 bp upstream
Tssr152156	transcription start site region 152156			1201 bp upstream
Tssr152157	transcription start site region 152157			1252 bp upstream
Tssr152158	transcription start site region 152158			1309 bp upstream
Tssr152159	transcription start site region 152159			1339 bp upstream
Tssr152160	transcription start site region 152160			1389 bp upstream
Tssr152161	transcription start site region 152161			1406 bp upstream
Tssr152162	transcription start site region 152162			1422 bp upstream
Tssr152163	transcription start site region 152163			1447 bp upstream
Tssr152164	transcription start site region 152164			1487 bp upstream
Tssr152165	transcription start site region 152165			1540 bp upstream
Tssr152166	transcription start site region 152166			1606 bp upstream
Tssr152167	transcription start site region 152167			1621 bp upstream
Tssr152168	transcription start site region 152168			1656 bp upstream
Tssr152169	transcription start site region 152169			1717 bp upstream
Tssr152170	transcription start site region 152170			1798 bp upstream
Tssr152171	transcription start site region 152171			1858 bp upstream
Tssr152172	transcription start site region 152172			1965 bp upstream
Tssr152173	transcription start site region 152173			1988 bp upstream
Tssr154083	transcription start site region 154083			1057 bp downstream
Tssr154084	transcription start site region 154084			1081 bp downstream
Tssr154085	transcription start site region 154085			1353 bp downstream
Tssr154086	transcription start site region 154086			1908 bp downstream