rs235056473 SNP Detail

Summary

• ID
  rs235056473
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70990139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAGGGAGG GCAAAGGAGA
  GGAGAGGGGA GGGGATAGAG GAGGGAGTAA AGCAGGGAGG AGGGGTACCA GGAGGAGGAG
  GAGGATAAGG GAGGAGTGGC AGGGAGAGGA GATGAAGCAG ACTCATGGTA AGTACTGGGC
  ATCCTTCACG CCTATGACCC AGCAGGAAGG TGTTTTGTCC ACCTACATGA GAACTTGGGG
  K
  AGAGACAAGG CCAGGACACA GTCATATCTA GCTGTTCACC CCTGTGCTTT TGTGGAAAAC
  TGTCTTGGTG TGTTACTCCA AAGTCCTCTG CCACCTGCCA CCGCTGCAGC TCTGTGGGAC
  TTCTCACTTA AGGGCAAGAT TGAGCTGCAT AGAGACAGGC ATCCAGCATT CATTGTTCTC
  TAGTCCATCC CCTGGTTACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324417481	CHEV_13_70980898	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235056473					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70990139 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	209 bp upstream
Cpgi5821	CpG island 5821	180 bp distal
Gm36529	predicted gene, 36529	within coordinates
Tssr123158	transcription start site region 123158	304 bp upstream
Tssr123159	transcription start site region 123159	266 bp upstream
Tssr123160	transcription start site region 123160	237 bp upstream
Tssr123161	transcription start site region 123161	210 bp upstream