rs235066472 SNP Detail

Summary

• ID
  rs235066472
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:74209467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCACACAC ACACACACAC
  ACACACACAC ACACACACAC ACACACACAT ACACACACAC ACACACACAC ACACAGAGTT
  CACCTTTTAC CAGAAAGAAG CTGGCCAACA GGGAGAGCAG GGGAGTGAAA GAAGTATCTA
  TTGGAGTAGA AAGGTTTTGT GTACATACAC CCTCTGTGGT TGTAAGTGAA CTTGCCCACC
  S
  CCCACCGCAC CACACACAAA ACCAACTATG TGGATGTAGG GGAGGGGTAT CTCTAATCTC
  GGCCAGCTTG TTTTAGCCAA GATCTATGGC TAACTACGGA ATCCCCAAGA GAAAATAGGG
  GGAGGACTGG CATCGGGCTA ATGTTGCTCA GTTGCCTCCT GACCTCTCAA CACTCACGGA
  CTATAATTCG GGACCTTGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396852695	MGP_WTSI_16_74412824	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235066472					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396852695	MGP_WTSI_16_74412824	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:74209467 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi8368	CpG island 8368			354 bp distal
Robo2	roundabout guidance receptor 2			Intron
				mRNA-UTR
Rr518051	regulatory region 518051			1804 bp distal
Rr518052	regulatory region 518052			555 bp distal
Rr518053	regulatory region 518053			446 bp proximal
Rr518054	regulatory region 518054			647 bp proximal
Tssr141737	transcription start site region 141737			1149 bp upstream
Tssr141738	transcription start site region 141738			1128 bp upstream
Tssr141739	transcription start site region 141739			1036 bp upstream
Tssr141740	transcription start site region 141740			951 bp upstream
Tssr141741	transcription start site region 141741			848 bp upstream
Tssr141742	transcription start site region 141742			787 bp upstream
Tssr141743	transcription start site region 141743			773 bp upstream
Tssr141744	transcription start site region 141744			747 bp upstream
Tssr141745	transcription start site region 141745			699 bp upstream
Tssr141746	transcription start site region 141746			448 bp upstream