rs235067095 SNP Detail

Summary

• ID
  rs235067095
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45159950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGTGCTG AGGGCGTTTT
  TTAAGGCCAG CAACCTCCGC CAGGTTTCTG GCGATTTCTC TCCTAAGTCA CGCCCACTTT
  TCCACCCGCA GAGAGCCCGC CCCCAGAATA CTGATTGGTC CACGCTGACT CTGAGCTTCC
  GCCCGCGTTA ACGGCCCCGC CCCTTTCCGA TGAGGTTTCC TTATCTTTGA AAATCTTTCC
  K
  GTTTTCTTGG ACGCTCACAG TCTTCAACGC AACATTTCCT GCGTCCGTTT TCAAGTAAAA
  CTCAAAGCCC TGCATGCCCA GGGATTGGGG GAGGGGGTGA GACAGGACAA CTTTTGCGGA
  CATCTTGCCG CGGTGTCTCT TGGGAGTTGT AGTTTTCTCG TTTAATTTCG CTCCACAAGT
  TCCTGCAAGT GTTAGGAAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371178582	MGP_WTSI_7_52765896	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235067095					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371178582	MGP_WTSI_7_52765896	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45159950 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19064	CpG island 19064	within coordinates
Gm45478	predicted gene 45478	1831 bp downstream
Nucb1	nucleobindin 1	137 bp upstream
Rr400313	regulatory region 400313	within coordinates
Rr646472	regulatory region 646472	211 bp distal
Rr646473	regulatory region 646473	within coordinates
Rr646474	regulatory region 646474	513 bp proximal
Tssr72423	transcription start site region 72423	166 bp upstream
Tssr72424	transcription start site region 72424	127 bp upstream
Tssr72425	transcription start site region 72425	113 bp upstream
Tulp2	TUB like protein 2	within coordinates