rs235087344 SNP Detail

Summary

• ID
  rs235087344
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136348232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACAATAT TTTAAAGGGA
  AATATGAGAT ATCTTGTATA AAAAAGAAGA TGGCCAATTC CTTCCTCTCT GACGTGTGTG
  TGTATGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGAGAG AGAGAGAGAG AGAGAGAGAG
  CACGCATGTG TGCACACAGG TGCTGGCACA TTGTGTATGT GTATATATGT GTATGCTTAC
  R
  TGTATCTCTG CATGTGTATG AGTGTGTGAC TCTGTGAGTG TGTATATGTG TATGTACGTG
  TGTGTGTGTG TGTGTGTGTG TATGTGTGTG ATTGTGTATA TGTGTGTATG TGTGTGCTAT
  TATGTGTATG TATATGTACT GGTATGTGTG TATGTGTGTA TATGTGTCTG TGAGTATGTG
  CTGTGTGTGT ATATATGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321356438	CHEV_4_136176836	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235087344					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136348232 () rs orientation: forward

Symbol	Name	Function Class
Lactbl1	lactamase, beta-like 1	1700 bp upstream
Rr86434	regulatory region 86434	169 bp proximal
Rr103033	regulatory region 103033	833 bp distal
Rr106544	regulatory region 106544	525 bp proximal
Rr398615	regulatory region 398615	404 bp upstream
Tssr39716	transcription start site region 39716	1691 bp upstream
Tssr39717	transcription start site region 39717	1710 bp upstream