rs235091837 SNP Detail

Summary

• ID
  rs235091837
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:152281078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGAAGCT GCCTCCCTCT
  TCCTCCTCCT GGCCTCCTCC CTTCCCCCCT CGCCTCGCCC GCCTCGCCTT GGTCCCCTGG
  CTTTTCTCTC CAGCCTCCTT CCTTTTCCTT CTCTTCCCCC CTCTCTTTGT TTATTTCTCC
  CTCCCTCTCC CTCTCCCTCC CTCCGCCCCC CCTCCTCTGC AGGGCAGGAG TTTTGCGCTC
  S
  GCCGCGAGAC GCTCGCTGGG CTGGCGCCGC GTCAGCAGGG GGCGGGGCGC GGCCGGGGGC
  GGGGCGGGGC GGGGCGGGGC GGGAGCGCGG GCGCCGCAGC TGCAGGAGTC GCTGGGAGTG
  CGCGCGGGCA GATCACAAGG CGGCGGCAGC GGAGACGGCC TGCAGGACCT GCTCTCTCAG
  CCCTCAGCCG AGGCCTACGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss404914036	MGP_WTSI_X_149932625	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs235091837					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404914036	MGP_WTSI_X_149932625	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:152281078 () rs orientation: forward

Symbol	Name	Function Class
Cpgi23010	CpG island 23010	within coordinates
Rr8387	regulatory region 8387	within coordinates
Tssr162405	transcription start site region 162405	84 bp upstream
Tssr162406	transcription start site region 162406	95 bp upstream
Tssr162407	transcription start site region 162407	120 bp upstream
Tssr162408	transcription start site region 162408	1263 bp upstream
Tssr162409	transcription start site region 162409	1286 bp upstream
Ubqln2	ubiquilin 2	150 bp upstream