rs235099512 SNP Detail

Summary

• ID
  rs235099512
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:132069138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAGGGG GAGGGGGAGG
  AGAAGGAGGG AGGAGGAGGA GGAAGACAAT GACAAAGACA GGGAGCAGGG AGGCTATGTC
  AATGCCAGGG AAGGTTGGAG GGCTGGACTA TGCCTAAGTA TTTAGAGGAT TAGAGAAGAT
  GGGGCCAAAG GGTAGAATTT CAGAGAGCCA GGGGGTAAGG TCAAAAGGTC TCAATAAACA
  S
  TTTCTGAACA TCTTCTGCAT GTCAAGCAGT AATCAGGTTT CTGAGCCCAG AGGATAAATA
  ACACCCTGGA CCCTCCCCTC CAGGAGTTTG TACGGAAGGG AAGCAAATGA GAAAGACGCT
  TAAGTCTGCT TTCCATTGCT ATAACAAGCA CCTGAGGTAA CCAGCTTATA AAGAGAATGT
  GGAGGGGGGA AGAGGGAGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351465989	MGP_WTSI_1_134037977	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235099512					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351465989	MGP_WTSI_1_134037977	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:132069138 () rs orientation: forward

Symbol	Name	Function Class
Cdk18	cyclin dependent kinase 18	1705 bp upstream
Cpgi722	CpG island 722	1570 bp distal
Gm29629	predicted gene 29629	within coordinates
Rr12249	regulatory region 12249	738 bp distal
Rr28498	regulatory region 28498	1337 bp distal
Rr30460	regulatory region 30460	1264 bp proximal
Tssr8718	transcription start site region 8718	1974 bp upstream
Tssr8719	transcription start site region 8719	1994 bp upstream
Tssr13627	transcription start site region 13627	1755 bp upstream
Tssr13628	transcription start site region 13628	1743 bp upstream
Tssr13629	transcription start site region 13629	1708 bp upstream