rs235102917 SNP Detail

Summary

• ID
  rs235102917
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47038142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAATGCAG CCCAGTGATC
  AAGGGTCTAC TTGGCATGCC CAAGTTCAAT GCCTAGCACC ATAAATACAA CAAACTTGCT
  CTTACCAGCC GGAATCCTAC TCTGATGCCA AAGCCTTCCT TTTTAGGAAG TTGACAGGGA
  CTGTACCGTG CCCTGAGGAA AAACCATTCA GCTCCACAGC AAGAGAGAGC CAGGGCAGAG
  W
  GTGACCCTGG AGGTGCATGT CTGGGGGGGC CTGGACAGAC AGACTTACCC CAATTGTCAA
  AGGATGGCTC TTTCCTCCGG TTCCAGCGCT CCTTAAGCGC ATATTTCAGC ATCTTGTCGC
  TGGCGTCCAC GCTCATCACG CTGAAGCCCT CTTCCACCAG CATGATGGAG TCCACTCTGG
  ATGAGGTCAG AAACGGGGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398327273	MGP_WTSI_17_46864165	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235102917					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398327273	MGP_WTSI_17_46864165	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47038142 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9242	CpG island 9242	1487 bp proximal
Gm65860	predicted gene, 65860	1831 bp upstream
Gnmt	glycine N-methyltransferase	within coordinates
Pex6	peroxisomal biogenesis factor 6	1673 bp downstream
Rr331605	regulatory region 331605	1342 bp distal
Rr331606	regulatory region 331606	259 bp proximal
Rr331607	regulatory region 331607	859 bp proximal
Rr339923	regulatory region 339923	1058 bp proximal
Tssr148377	transcription start site region 148377	893 bp upstream
Tssr148378	transcription start site region 148378	874 bp upstream
Tssr148379	transcription start site region 148379	861 bp upstream
Tssr148380	transcription start site region 148380	498 bp upstream
Tssr148381	transcription start site region 148381	140 bp downstream
Tssr148382	transcription start site region 148382	1942 bp downstream