rs235106158 SNP Detail

Summary

• ID
  rs235106158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:102987344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTTCCCC TAAGAGACAA
  AGGAATGGCA AGGGTAAGGG AGAGACTTGG AAGAGAGCAG AAGCATTCTA AGGTTAGGAT
  TCACATACAG CATGAAGACC ATGCTGTGTA GCTCTGCCCA GACTGCAGGA GCCAACCCAG
  CCGACTGAAC CAGTACAGAT GAGGAAATGC TGGGTGGAAG GTGTGACACC CCCCAACCCC
  Y
  TGAATGCCTT GACCTCCACA GGCAGGGAGG GGTGTGGCTT AGGAGTAGTT CTTTCACTGC
  TGGAGTGTCC AACTTCTAGC TACGGAGACA CAACATTGCA ATCTACAAAC TTCACAATGT
  AAAACCAGGC AATGGGATCA ACAACAATAA ACAAAAACTT GCCCCAAAAA ATGTAGAAAC
  CCATCCAGTA TCTCATAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378738075	MGP_WTSI_9_103012475	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235106158					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378738075	MGP_WTSI_9_103012475	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:102987344 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22229	CpG island 22229	990 bp proximal
D9Mit276	DNA segment, Chr 9, Massachusetts Institute of Technology 276	619 bp proximal
Gm46128	predicted gene, 46128	within coordinates
Rab6b	RAB6B, member RAS oncogene family	1642 bp upstream
Rr401633	regulatory region 401633	1302 bp downstream
Tssr86758	transcription start site region 86758	1581 bp upstream
Tssr86759	transcription start site region 86759	1596 bp upstream
Tssr86760	transcription start site region 86760	1730 bp upstream
Tssr86761	transcription start site region 86761	1792 bp upstream
Tssr86762	transcription start site region 86762	1846 bp upstream
Tssr86763	transcription start site region 86763	1893 bp upstream
Tssr86764	transcription start site region 86764	1904 bp upstream
Tssr86765	transcription start site region 86765	1918 bp upstream
Tssr86766	transcription start site region 86766	1927 bp upstream
Tssr86767	transcription start site region 86767	1949 bp upstream