rs235106645 SNP Detail

Summary

• ID
  rs235106645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:59522234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTAGATA CAGGATGGCC
  GGTCTGGGAG AGCGCGTAGC CCAGGACTGC TTCGCAGTGT GCTCTTCGTG AGCCGGACAC
  CCCATCTCTG GGCCATTGAG AGCCCCACTG ACTCCTTTCA TTCTCCTGCA GTTAAAAGTG
  GCATCTGGGT TTCCAACAAC TCACCTGAAA GCCCCCCTCC GCCCCCCCCC CCCCCCAACG
  Y
  GAGCGCCCCA CCTCTCCGTT TGCTGCTGCC ACCTACTGTC CACTCTCGTG AAATCTCTGA
  TGCGTGGTCA AGCACAGAGA GAAACTCTTT CTTCTTGGTG GATGAGAACA GTTTTGGGAG
  AGAAACGGAT GGGGCGGGAG GAGAAGGCAG CAGATATATA TTTTTTTCCC AAGTTGGTAC
  TAGAGCAGCC ACCTCAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394214982	MGP_WTSI_15_59481940	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235106645					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394214982	MGP_WTSI_15_59481940	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:59522234 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7127	CpG island 7127	540 bp distal
Gm56697	predicted gene, 56697	763 bp upstream
Rr390806	regulatory region 390806	1032 bp upstream
Trib1	tribbles pseudokinase 1	within coordinates
Tssr4603	transcription start site region 4603	108 bp upstream
Tssr131386	transcription start site region 131386	1954 bp downstream
Tssr131387	transcription start site region 131387	1848 bp downstream
Tssr131388	transcription start site region 131388	1824 bp downstream
Tssr131389	transcription start site region 131389	1796 bp downstream
Tssr131390	transcription start site region 131390	1698 bp downstream
Tssr131391	transcription start site region 131391	1680 bp downstream
Tssr131392	transcription start site region 131392	339 bp upstream
Tssr134446	transcription start site region 134446	218 bp downstream