rs235113127 SNP Detail

Summary

• ID
  rs235113127
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129272150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGTGGAG ATATTGGTTC
  AAGGAGAGAG GGAGGGACTT AGGCGTGCCC ACAAATACTG TATACATGTG ACATTATTGT
  ACTTAAGTTT AGCGACGTAA AATGGGAGAG AGTTCCACAA AATCGCCCTT TGACGAAGCA
  CTTAATTTCA GTTATAGCCT TTTAGAAACC TCTGTAGGTC CCCATCAAGC CCTTTGAAGA
  R
  GCAAGCCCGG AGGGGCTGAG ATTAAGAGGC CGTGATTCTT TATATAAAAC TAGTACAAAA
  CAGTGTTTCG TGTTTTCAAA TATAAAAATT GGTCGTAAAA TCAAGTTTCT CTTCTGACGT
  GACCCTAATA TTTATGGCAC ACAAATATCA GGTGATACAT TTCCTAAAAT AGTAAACCGC
  TGAATTTTCA TACTGCTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312496	CHEV_4_129055601	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235113127					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129272150 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14890	CpG island 14890	278 bp distal
Gm12980	predicted gene 12980	1487 bp upstream
Rr377177	regulatory region 377177	1457 bp upstream
Rr600215	regulatory region 600215	252 bp distal
Rr600216	regulatory region 600216	776 bp distal
Rr600217	regulatory region 600217	within coordinates
Tssr43497	transcription start site region 43497	519 bp upstream
Tssr43498	transcription start site region 43498	433 bp upstream
Tssr43499	transcription start site region 43499	407 bp upstream
Tssr43500	transcription start site region 43500	639 bp downstream
Zbtb8a	zinc finger and BTB domain containing 8a	329 bp upstream