rs235127837 SNP Detail

Summary

• ID
  rs235127837
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5773549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGATTTA TGCATATTTT
  TAATTATGAG TATTTGTGTG TATGTATGTA GTATGTATGT ATGTATGTAT GTATGTATGT
  ATGTATGTAT GTATGTATGT ATGTGTAGAT AGGTGTACAA GAAATGCAGA TGACCAAAGA
  GGCCAGAAGA GGGTATCAGA TCCCCAGATC TGCAGTAACA CATTTTTTTT TTCTGAGTGT
  R
  CAGTGTGTTG GAACTGAACT CCGATCCTCA GAAAGAGAGT GAGCACTCAC ATCTGCTGAG
  CCATATCTCA AGCCCTGAGG GTTCAATATT TCTGTAATGT GTTATGCCTT TTAAAAAACA
  CAACATGATA TCTGACATAA TTATATCAGT GTGTTAATAT TTTCGGTTTT TCTCAACTTA
  AATTTGCTGA TGATCCTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324223058	CHEV_13_5722796	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235127837					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5773549 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	within coordinates
Gm57599	predicted gene, 57599	1922 bp upstream
Rr387902	regulatory region 387902	301 bp upstream
Rr474521	regulatory region 474521	41 bp distal
Rr474522	regulatory region 474522	872 bp proximal
Tssr121308	transcription start site region 121308	889 bp downstream