rs235130260 SNP Detail

Summary

• ID
  rs235130260
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12746813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cttgctgcc ctggaacttg tgtagaacct
  gtatgctttt ccttATTTCA TGCAGTATAG GAGATCCCAA TTTAGGATCA TCTCCAGCCC
  TCAGAAAAAC TAATACCTGA AATGAGTATC CTTGCACCTC ACAGTGGCAG GCAAACTtta
  K
  gtgaaagtgc cagagaaaag ttcactgttg gtcatcgggt tgccggcaaa tctagctcta
  cgcagctgta tgcctgaggt gccggctttc ctgcttgttg actagggtgc acgtcatgtt
  tctgccccct cattctgtca catgcctaac                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322107159	CHEV_7_13598235	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235130260					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12746813 () rs orientation: forward

Symbol	Name	Function Class
Rr166761	regulatory region 166761	1812 bp distal
Rr366829	regulatory region 366829	within coordinates
Tssr64510	transcription start site region 64510	1858 bp upstream
Tssr70638	transcription start site region 70638	988 bp downstream
Tssr70639	transcription start site region 70639	1354 bp downstream
Tssr70640	transcription start site region 70640	1396 bp downstream