rs235131210 SNP Detail

Summary

• ID
  rs235131210
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:17906832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACATGCTG TAAACCACTA
  AACTATCTCT GCAGACACTT AATCTTAATT TCCCAGTCAA GGTCTCTCAC TACACCTGAA
  ATTCACTGAT TCAGCAAGGC TAGGTAGTCA TCAAGGCCCA GAGATACTCG CTGCCCCGTC
  TCTCAGTACT GAGCTTTTAT GCTTGTCACT ATACACAGAT TTTAAAATGT ATCTAATATT
  W
  TATATATATA TATAGTTGTA TAGATTTAAA ATTGTGACTA TAATATAATT ATGTCATTTT
  CTCCATTGCT TTCCCTTCTC TAAATTCTTA CATGTACCCC TACCTCTATT TCAATTTGTT
  AGTCCCTTAT TCTTTTAATA TTTTATAAAT ACACACGAAT AGAGAGGGAG AGAGAGAGAA
  TGCCCAGATT GTTTTATATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	RIIIS/J	SJL/J	SPRET/EiJ
ss399854013	MGP_WTSI_18_17932284	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	RIIIS/J	SJL/J	SPRET/EiJ
rs235131210					SNP	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399854013	MGP_WTSI_18_17932284	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:17906832 () rs orientation: forward

Symbol	Name	Function Class
Tssr150152	transcription start site region 150152	401 bp downstream