rs235138061 SNP Detail

Summary

• ID
  rs235138061
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46140747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTTGGGC CAACAGCTGA
  AGTAAGGAAA GACCTAGCGT GGGGCCTGGA GCAGGTCAAG GGCTGCCCAT CCAGGGTGGG
  CAGAGAGACC AGTGAGAAGA TGCTGGAACT GAGCTGGCTA GCCCTTCACG GGCTTTCCTA
  CCAGCTGGGC ACCATGGCAG GTTCCAGTGG AGGACTAGGG ATGGGATTCA TCTGGCTGTT
  R
  GGTAACCACA GCCCCTCATT CAGCCTATGA GTGCCAAATC CCTTTTCCTT GGTAACCCCC
  AGTACTGGTC AGACAGCACC CAAAACAAAA CAAAACAAAA CAAAAAACAA AAAACGGGAC
  TGGCCTTGTA ACCAGCACCG ACCACATCTG TGTTCTTGGT GCCTTCCGCC ATGTGTACAG
  AGGAATGTAA AGGGAAGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377451214	MGP_WTSI_9_46037532	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235138061					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377451214	MGP_WTSI_9_46037532	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46140747 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	within coordinates
Cpgi21701	CpG island 21701	497 bp proximal
Gm67994	predicted gene, 67994	1152 bp downstream
Rr195182	regulatory region 195182	547 bp distal
Rr195183	regulatory region 195183	54 bp proximal
Rr206362	regulatory region 206362	within coordinates
Tssr84839	transcription start site region 84839	1075 bp downstream
Tssr84840	transcription start site region 84840	735 bp downstream
Tssr84841	transcription start site region 84841	605 bp downstream
Tssr84842	transcription start site region 84842	503 bp downstream
Tssr84843	transcription start site region 84843	469 bp downstream
Tssr84844	transcription start site region 84844	295 bp downstream
Tssr84845	transcription start site region 84845	258 bp downstream
Tssr84846	transcription start site region 84846	203 bp downstream
Tssr84847	transcription start site region 84847	373 bp upstream
Tssr84848	transcription start site region 84848	460 bp upstream
Tssr84849	transcription start site region 84849	552 bp upstream
Tssr84850	transcription start site region 84850	592 bp upstream
Tssr84851	transcription start site region 84851	636 bp upstream
Tssr84852	transcription start site region 84852	655 bp upstream
Tssr84853	transcription start site region 84853	753 bp upstream
Tssr84854	transcription start site region 84854	783 bp upstream
Tssr84855	transcription start site region 84855	802 bp upstream
Tssr84856	transcription start site region 84856	818 bp upstream
Tssr84857	transcription start site region 84857	936 bp upstream
Tssr84858	transcription start site region 84858	955 bp upstream
Tssr89313	transcription start site region 89313	485 bp downstream
Tssr89314	transcription start site region 89314	545 bp downstream
Tssr89315	transcription start site region 89315	559 bp downstream
Tssr89316	transcription start site region 89316	587 bp downstream
Tssr89317	transcription start site region 89317	599 bp downstream
Tssr89318	transcription start site region 89318	621 bp downstream
Tssr89319	transcription start site region 89319	635 bp downstream
Tssr89320	transcription start site region 89320	644 bp downstream
Tssr89321	transcription start site region 89321	666 bp downstream
Tssr89322	transcription start site region 89322	712 bp downstream
Tssr89323	transcription start site region 89323	777 bp downstream
Tssr89324	transcription start site region 89324	827 bp downstream
Tssr89325	transcription start site region 89325	851 bp downstream
Tssr89326	transcription start site region 89326	891 bp downstream
Tssr89327	transcription start site region 89327	1012 bp downstream