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rs235140833 SNP Detail
Summary
  • ID
    rs235140833
  • Variation Type
    SNP
  • Alleles
    C
Genome Location and Flanking Sequence
  • Location
    Chr1:149979284 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTTTGTGGCT ATGAAAAAGT
CACTTATTGA GCTAGATTGG TGATTAAGAA CAGTTGTTGC TTTTGCTTAA GTTCTTAACA
CCTACATGAC AGTTCACAAC CACCTATAAC TCCAGTCAGT TCTAGGAGAT TCCATGTTTT
GTAACATTTT AGGGCACCAG ACAAGCACAT GACATACATA CATACATACA TACATAGAGG
C
AAATTCTCAT ACATATAAAA ATAAAATAAA TCTTAAGAAA ATCACGTGGT GAATTTTAAA
GACAACTAAA TCATCAATAT TGAATAAGAA ATTATAGTAA AAAATCAGTA AATTGAACTT
TCTCCATACT TAATTTTCTA GGTGGACTTA AATCACATTT ATGGTGAAAC TCTGGACAGA
CAACATAAAC TGCGCCTTTT                                            

C = C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss351888745 MGP_WTSI_1_151950663 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235140833 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss351888745 MGP_WTSI_1_151950663 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149979284 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ptgs2 prostaglandin-endoperoxide synthase 2 within coordinates
Tssr242 transcription start site region 242 728 bp downstream
Tssr9230 transcription start site region 9230 1420 bp downstream
Tssr9231 transcription start site region 9231 1387 bp downstream
Tssr9232 transcription start site region 9232 1344 bp downstream
Tssr9233 transcription start site region 9233 888 bp downstream
Tssr9234 transcription start site region 9234 859 bp downstream
Tssr9235 transcription start site region 9235 828 bp downstream
Tssr9236 transcription start site region 9236 803 bp downstream
Tssr9237 transcription start site region 9237 771 bp downstream
Tssr9238 transcription start site region 9238 740 bp downstream
Tssr9239 transcription start site region 9239 706 bp downstream
Tssr9240 transcription start site region 9240 692 bp downstream
Tssr9241 transcription start site region 9241 662 bp downstream
Tssr9242 transcription start site region 9242 646 bp downstream
Tssr9243 transcription start site region 9243 519 bp downstream
Tssr9244 transcription start site region 9244 468 bp downstream
Tssr9245 transcription start site region 9245 432 bp downstream
Tssr9246 transcription start site region 9246 413 bp downstream
Tssr9247 transcription start site region 9247 278 bp downstream
Tssr9248 transcription start site region 9248 132 bp upstream
Tssr9249 transcription start site region 9249 159 bp upstream
Tssr9250 transcription start site region 9250 327 bp upstream
Tssr9251 transcription start site region 9251 373 bp upstream
Tssr9252 transcription start site region 9252 428 bp upstream
Tssr9253 transcription start site region 9253 458 bp upstream
Tssr9254 transcription start site region 9254 485 bp upstream
Tssr9255 transcription start site region 9255 504 bp upstream
Tssr9256 transcription start site region 9256 744 bp upstream
Tssr9257 transcription start site region 9257 768 bp upstream
Tssr9258 transcription start site region 9258 791 bp upstream
Tssr9259 transcription start site region 9259 816 bp upstream
Tssr9260 transcription start site region 9260 871 bp upstream
Tssr9261 transcription start site region 9261 926 bp upstream
Tssr9262 transcription start site region 9262 934 bp upstream
Tssr9263 transcription start site region 9263 956 bp upstream
Tssr9264 transcription start site region 9264 1001 bp upstream
Tssr9265 transcription start site region 9265 1032 bp upstream
Tssr9266 transcription start site region 9266 1121 bp upstream
Tssr9267 transcription start site region 9267 1412 bp upstream
Tssr9268 transcription start site region 9268 1468 bp upstream
Tssr9269 transcription start site region 9269 1851 bp upstream
Tssr9270 transcription start site region 9270 1891 bp upstream
Tssr9271 transcription start site region 9271 1915 bp upstream
Tssr9272 transcription start site region 9272 1945 bp upstream
Tssr9273 transcription start site region 9273 1997 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory