rs235152591 SNP Detail

Summary

• ID
  rs235152591
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24022887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    catggccga ggagctattg gcaatttatg
  gctgctagcc ggtgagagca tcagttttct tcagggattc agattctaag atgctatcca
  tattccatta gatagttcaa cacctatgaa cacacagaca acactacgtg actcagtagg
  R
  aggaggagga ggaggaggag gaggaggagg aggaggagga ggaggagaag caatgaagaa
  gcatgaactt gagagggaaa agtgacagtg gggaatggga ggaatttgtt ggcaaaaatg
  agtgaggtct gatcacaatg catcatgtgc                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324292295	CHEV_13_23930773	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235152591					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24022887 () rs orientation: forward

Symbol	Name	Function Class
Gm56568	predicted gene, 56568	505 bp downstream
Rr475959	regulatory region 475959	1990 bp distal
Rr475960	regulatory region 475960	534 bp proximal
Rr475961	regulatory region 475961	617 bp proximal
Slc17a3	solute carrier family 17 (sodium phosphate), member 3	530 bp upstream
Tssr4011	transcription start site region 4011	721 bp upstream
Tssr4012	transcription start site region 4012	819 bp upstream
Tssr118873	transcription start site region 118873	1994 bp downstream
Tssr118874	transcription start site region 118874	1943 bp downstream
Tssr118875	transcription start site region 118875	497 bp upstream
Tssr118876	transcription start site region 118876	541 bp upstream
Tssr118877	transcription start site region 118877	673 bp upstream
Tssr118878	transcription start site region 118878	694 bp upstream