rs235155820 SNP Detail

Summary

• ID
  rs235155820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:104423398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAACAA ACAAAAGTCA
  GAGAATGACA CCAAAAATTC TAACAGTGAC ATTAGTCTAC CCACCCCATC CCCCACCCCC
  TACCCCGTGC CTTTCCTTTT TCCAAGAAAC TGTAAATAAC AAACCAGACA AGACTCCGCA
  AGAGGTTAGA GGAGGAGGAA ATAGGCGGGG TGGGTTAGGG GAGAGAGGTT AGAGGGCCGG
  R
  GTTTCTCTCA TTCACAGGGT GGAAAAGTTG ACATTGTCTA AGCCCTTCTG AATGGCTGGT
  GGTTGGATAC CCCGATTGTA CCTCTACTTC CCCTCCCCCT CCACGTGACG ACCCAGGACA
  CATGCGCACC CGACGCAGCC GAGGCACATC TGCAGACTGA CGTCAGTTTG TTCTGCCTCT
  GAGGAAAGCT GCCAAAATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389790215	MGP_WTSI_13_105076970	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235155820					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389790215	MGP_WTSI_13_105076970	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:104423398 () rs orientation: forward

Symbol	Name	Function Class
Adamts6	ADAM metallopeptidase with thrombospondin type 1 motif 6	945 bp upstream
Gm60746	predicted gene, 60746	within coordinates
Gm60750	predicted gene, 60750	210 bp upstream
Rr369763	regulatory region 369763	within coordinates
Rr403946	regulatory region 403946	572 bp downstream
Tssr120915	transcription start site region 120915	143 bp upstream
Tssr120916	transcription start site region 120916	199 bp upstream
Tssr120917	transcription start site region 120917	228 bp upstream
Tssr120918	transcription start site region 120918	246 bp upstream
Tssr120919	transcription start site region 120919	467 bp upstream
Tssr120920	transcription start site region 120920	562 bp upstream
Tssr120921	transcription start site region 120921	601 bp upstream
Tssr120922	transcription start site region 120922	618 bp upstream
Tssr120923	transcription start site region 120923	965 bp upstream
Tssr120924	transcription start site region 120924	1012 bp upstream
Tssr120925	transcription start site region 120925	1042 bp upstream