rs235156095 SNP Detail

Summary

• ID
  rs235156095
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74538218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGTGCCAT ATTCATTGTA TCCTTCTTGC
  ACTGCTCCTG TGCTCCCGTG TTGTAAGCCA GCTTGCTGTA TGCATCTCAG ATGTCGGTTG
  GTACGTCCAC CCTCTGCTGT TCTTCAGGAA ATCCGTGGCC TCACAGATTG GAAATGAGCC
  M
  TGAGTGTAAA CAGCCGCTCC AGAGCATAGC TCCTTAATAA AGAGATGTAC CTCCATAAAG
  AGCAGAGCTC TTTCGTCTCA GAGAACACCA TTCTGGCCAG TCACAAACAT GTGGCTAAGG
  CTCACATGAA GGGGGTGACT TAGTCAAGCC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320348119	CHEV_2_74545931	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235156095					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74538218 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11800	CpG island 11800	1636 bp distal
Gm38462	predicted gene, 38462	within coordinates
Hoxd8	homeobox D8	mRNA-UTR
Igs15	intergenic site 15	within coordinates
Rr559368	regulatory region 559368	1013 bp distal
Rr559369	regulatory region 559369	within coordinates
Rr559370	regulatory region 559370	727 bp proximal
Rr559371	regulatory region 559371	1659 bp proximal
Tssr18431	transcription start site region 18431	1839 bp upstream